See here information on what you need to run properly Java Protein Dossier and BLUE STAR STING Components

Launch JAVA PROTEIN DOSSIER with a public PDB file

Chose the size of the BLUE STAR STING window:
640x480 800x640 1024x768 1280x1024

Enter 4 letter code of the PDB format file (Example: type in 1ppf). Then STING It!
    PDB Code:

Launch PROTEIN DOSSIER with your local file in TGZ format

Browse to TGZ format file at any position on your local computer. Then STING It!

Chose the size of the BLUE STAR STING window:
640x480 800x640 1024x768 1280x1024

Launch JAVA PROTEIN DOSSIER for two structurally aligned PDB files

Choose two PDBs and see them aligned by CE on JPD.

Chose the size of the BLUE STAR STING window:
640x480 800x640 1024x768 1280x1024

Choose the first PDB and chain: Choose the second PDB and chain:
PDB Code 1: Chain 1:        PDB Code 2: Chain 2:     Help
or   or
PDB File 1: Chain 1:        PDB File 2: Chain 2:
or   or
TGZ File 1: Chain 1:        TGZ File 2: Chain 2:     Help